The Microbial Promoter Database
| NCBI ID : NC_010118 Version : NC_010118.1 Clade: Bacteria-Bacteroidetes/Chlorobi Create Date: 06/12/07 Update Date: 16/12/08 | Genome size: 245530 nts %GC content: 22.44 %Coding (including protein and RNA): 94.81 No. of protein coding genes: 227 No. of RNA coding genes: 35 | No of Adenine(A) Bases : 95280 No of Guanine(G) Bases : 28018 No of Thymine(T) Bases : 95151 No of Cytosine(C) Bases : 27081 |
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| Gene ID | Gene name | Left end position |
Right end position |
Length | Transcription direction |
Gene Product |
|---|---|---|---|---|---|---|
| PROTEIN:lipoyl-[acyl-carrier-protein]-protein-N-li | ||||||
| PROTEIN:valyl-tRNA synthetase | ||||||
| PROTEIN:putative ATP-dependent metalloprotease | ||||||
| PROTEIN:DNA polymerase III, beta subunit | ||||||
| PROTEIN:phenylalanyl-tRNA synthetase beta subunit | ||||||
| PROTEIN:3-dehydroquinate synthase | ||||||
| PROTEIN:type IV DNA gyrase A subunit | ||||||
| PROTEIN:putative methyltransferase | ||||||
| PROTEIN:putative ribosomal protein S1 | ||||||
| PROTEIN:putative type II NADH dehydrogenase | ||||||
| PROTEIN:transcription termination factor Rho | ||||||
| PROTEIN:peptide chain release factor 1 | ||||||
| PROTEIN:3-dehydroquinate dehydratase | ||||||
| PROTEIN:putative 3-oxoacyl-[acyl-carrier-protein] | ||||||
| PROTEIN:acyl carrier protein | ||||||
| PROTEIN:putative ATP synthase F1, epsilon subunit | ||||||
| PROTEIN:F0F1 ATP synthase subunit beta | ||||||
| PROTEIN:dimethyladenosine transferase | ||||||
| RNA:Met tRNA | ||||||
| PROTEIN:putative signal peptidase | ||||||
| RNA:Asn tRNA | ||||||
| PROTEIN:glutaminyl-tRNA synthetase | ||||||
| PROTEIN:tRNA uridine 5-carboxymethylaminomethyl mo | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:S-adenosyl-L-methionine dependent methyltr | ||||||
| RNA:Cys tRNA | ||||||
| PROTEIN:ribose-phosphate pyrophosphokinase | ||||||
| PROTEIN:ribosomal protein L25 | ||||||
| PROTEIN:prolipoprotein diacylglyceryl transferase | ||||||
| PROTEIN:ATP synthase F1, gamma subunit | ||||||
| PROTEIN:ATP synthase F1, alpha subunit | ||||||
| PROTEIN:highly suspect ATP synthase F1, delta subu | ||||||
| PROTEIN:ATP synthase F0 subunit b | ||||||
| PROTEIN:ATP synthase F0 subunit c | ||||||
| PROTEIN:ATP synthase F0 subunit a | ||||||
| PROTEIN:putative aspartate kinase | ||||||
| PROTEIN:MarC family integral membrane protein | ||||||
| PROTEIN:3-isopropylmalate dehydrogenase | ||||||
| PROTEIN:3-isopropylmalate dehydratase small subuni | ||||||
| PROTEIN:3-isopropylmalate dehydratase large subuni | ||||||
| PROTEIN:2-isopropylmalate synthase | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:tyrosyl-tRNA synthetase | ||||||
| PROTEIN:leucyl-tRNA synthetase | ||||||
| RNA:Phe tRNA | ||||||
| PROTEIN:2-oxoglutarate ferredoxin oxidoreductase b | ||||||
| PROTEIN:seryl-tRNA synthetase | ||||||
| PROTEIN:50S ribosomal subunit protein L28 | ||||||
| PROTEIN:50S ribosomal protein L33 | ||||||
| PROTEIN:hypothetical protein | ||||||
| RNA:His tRNA | ||||||
| PROTEIN:ribosomal large subunit pseudouridine synt | ||||||
| PROTEIN:tRNA pseudouridine synthase A | ||||||
| PROTEIN:DNA-directed RNA polymerase beta' subunit | ||||||
| PROTEIN:DNA-directed RNA polymerase beta subunit | ||||||
| PROTEIN:50S ribosomal subunit protein L7/L12 | ||||||
| PROTEIN:50S ribosomal subunit protein L10 | ||||||
| PROTEIN:50S ribosomal subunit protein L1 | ||||||
| PROTEIN:50S ribosomal subunit protein L11 | ||||||
| RNA:Trp tRNA | ||||||
| PROTEIN:elongation factor Tu | ||||||
| RNA:Thr tRNA | ||||||
| RNA:Gly tRNA | ||||||
| RNA:Tyr tRNA | ||||||
| RNA:Thr tRNA | ||||||
| PROTEIN:cytochrome c | ||||||
| PROTEIN:molybdopterin oxidoreductase, iron-sulfur | ||||||
| PROTEIN:molybdopterin oxidoredutase membrane subun | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:cysteine desulfurase SufE subunit | ||||||
| PROTEIN:polyprenyl synthetase | ||||||
| RNA:small subunit ribosomal RNA (16S rRNA) | ||||||
| RNA:Ile tRNA | ||||||
| RNA:Ala tRNA | ||||||
| RNA:large subunit ribosomal RNA (23S rRNA) | ||||||
| RNA:5S ribosomal RNA (5S rRNA) | ||||||
| PROTEIN:succinyl-CoA synthetase beta subunit | ||||||
| PROTEIN:putative Sec-independent tatA/E protein tr | ||||||
| PROTEIN:ATP-dependent Clp protease, proteolytic su | ||||||
| PROTEIN:ATP-dependent protease ATP-binding subunit | ||||||
| PROTEIN:DNA mismatch repair protein MutS | ||||||
| RNA:Gly tRNA | ||||||
| RNA:Leu tRNA | ||||||
| PROTEIN:30S ribosomal subunit protein S2 | ||||||
| PROTEIN:30S ribosomal subunit protein S9 | ||||||
| PROTEIN:50S ribosomal protein L13 | ||||||
| PROTEIN:molecular chaperone DnaK | ||||||
| PROTEIN:translation initiation factor 3 | ||||||
| PROTEIN:50S ribosomal subunit protein L35 | ||||||
| PROTEIN:50S ribosomal subunit protein L20 | ||||||
| PROTEIN:peptide deformylase | ||||||
| PROTEIN:Holliday junction resolvase-like protein | ||||||
| PROTEIN:2,3,4,5-tetrahydropyridine-2-carboxylate N | ||||||
| PROTEIN:branched-chain amino acid aminotransferase | ||||||
| PROTEIN:tRNA nucleotidyltransferase | ||||||
| PROTEIN:tRNA (5-methylaminomethyl-2-thiouridylate) | ||||||
| PROTEIN:chaperone protein dnaJ | ||||||
| PROTEIN:heat shock protein GrpE (Hsp-70 cofactor) | ||||||
| PROTEIN:dihydrolipoamide dehydrogenase | ||||||
| PROTEIN:M42 family metalloprotease | ||||||
| PROTEIN:putative ribosome-binding factor A | ||||||
| PROTEIN:tRNA modification GTPase TrmE | ||||||
| RNA:Val tRNA | ||||||
| PROTEIN:putative DNA polymerase III, alpha subunit | ||||||
| PROTEIN:putative argininosuccinate synthase (argG) | ||||||
| PROTEIN:N-acetyl-gamma-glutamyl-phosphate reductas | ||||||
| PROTEIN:acetylornithine aminotransferase | ||||||
| PROTEIN:carbamoyl phosphate synthase small subunit | ||||||
| PROTEIN:carbamyl phosphate synthase large subunit | ||||||
| PROTEIN:putative ornithine carbamoyltransferase | ||||||
| PROTEIN:acetylglutamate kinase | ||||||
| PROTEIN:putative acetylornithine deacetylase (argE | ||||||
| RNA:Asp tRNA | ||||||
| RNA:Lys tRNA | ||||||
| PROTEIN:shikimate kinase | ||||||
| PROTEIN:putative tRNA(Ile)-lysidine synthetase | ||||||
| PROTEIN:tryptophan synthase subunit alpha | ||||||
| PROTEIN:bifunctional phosphoribosylanthranilate is | ||||||
| PROTEIN:indole-3-glycerol phosphate synthase activ | ||||||
| PROTEIN:anthranilate phosphoribosyltransferase | ||||||
| PROTEIN:anthranilate synthase component II | ||||||
| PROTEIN:anthranilate synthase component I | ||||||
| PROTEIN:cysteine desulfurase | ||||||
| PROTEIN:prolyl-tRNA synthetase | ||||||
| PROTEIN:ATP-dependent protease | ||||||
| PROTEIN:diaminopimelate decarboxylase | ||||||
| RNA:Ser tRNA | ||||||
| PROTEIN:chorismate synthase | ||||||
| PROTEIN:heat shock protein 90 | ||||||
| PROTEIN:putative MiaB-like protein | ||||||
| PROTEIN:translocase | ||||||
| PROTEIN:50S ribosomal subunit protein L19 | ||||||
| PROTEIN:ferredoxin (4Fe-4S) | ||||||
| PROTEIN:1,4-dihydroxy-2-naphthoate octaprenyltrans | ||||||
| PROTEIN:threonine synthase | ||||||
| PROTEIN:homoserine kinase | ||||||
| PROTEIN:aspartokinase/homoserine dehydrogenase | ||||||
| RNA:Arg tRNA | ||||||
| RNA:Pro tRNA | ||||||
| RNA:Ser tRNA | ||||||
| PROTEIN:putative NAD(P)-dependent malic enzyme | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:putative cytochrome c oxidase, cbb3-type, | ||||||
| PROTEIN:bifunctional; cytochrome c oxidase, cbb3-t | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:cation transport ATPase, E1-E2 family prot | ||||||
| PROTEIN:GTP-binding protein EngA | ||||||
| PROTEIN:lipoyl synthase | ||||||
| PROTEIN:50S ribosomal subunit protein L34 | ||||||
| PROTEIN:succinyl-CoA synthetase, alpha subunit | ||||||
| PROTEIN:CAAX amino terminal protease family protei | ||||||
| RNA:Leu tRNA | ||||||
| RNA:Leu tRNA | ||||||
| PROTEIN:putative 2-oxoglutarate ferredoxin oxidore | ||||||
| PROTEIN:Mrp/Nbp35 family ATP-binding protein | ||||||
| PROTEIN:tryptophanyl-tRNA synthetase | ||||||
| PROTEIN:putative outer membrane protein | ||||||
| PROTEIN:asparaginyl-tRNA synthetase | ||||||
| RNA:Ser tRNA | ||||||
| RNA:Met tRNA | ||||||
| PROTEIN:50S ribosomal subunit protein L21 | ||||||
| PROTEIN:50S ribosomal protein L27 | ||||||
| RNA:Arg tRNA | ||||||
| RNA:tmRNA (10Sa RNA) | ||||||
| PROTEIN:30S ribosomal subunit protein S6 | ||||||
| PROTEIN:30S ribosomal subunit protein S18 | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:dihydrodipicolinate synthase | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:peptide chain release factor RF2 | ||||||
| PROTEIN:dihydrodipicolinate reductase | ||||||
| PROTEIN:signal peptidase I | ||||||
| PROTEIN:30S ribosomal subunit protein S21 | ||||||
| PROTEIN:putative shikimate 5-dehydrogenase | ||||||
| PROTEIN:GTP-binding protein | ||||||
| PROTEIN:dihydrolipoamide dehydrogenase | ||||||
| RNA:Leu tRNA | ||||||
| PROTEIN:hypothetical protein | ||||||
| RNA:Met tRNA | ||||||
| PROTEIN:2-oxoglutarate dehydrogenase, E1 component | ||||||
| PROTEIN:2-oxoglutarate dehydrogenase, E2 component | ||||||
| PROTEIN:Sec-independent protein translocase protei | ||||||
| PROTEIN:SsrA (tmRNA)-binding protein | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:60 kDa chaperonin GroEL | ||||||
| PROTEIN:10 kDa chaperonin GroES | ||||||
| PROTEIN:RNA modification protein | ||||||
| PROTEIN:FeS assembly protein SufB | ||||||
| PROTEIN:putative FeS assembly ATPase SufC | ||||||
| PROTEIN:putative FeS assembly protein SufD | ||||||
| PROTEIN:cysteine desulphurase, SufS | ||||||
| PROTEIN:translation initiation factor IF-2 | ||||||
| PROTEIN:putative phospho-2-dehydro-3-deoxyheptonat | ||||||
| PROTEIN:putative prephenate dehydratase | ||||||
| PROTEIN:aspartate semialdehyde dehydrogenase | ||||||
| PROTEIN:30S ribosomal subunit protein S20 | ||||||
| RNA:Glu tRNA | ||||||
| PROTEIN:3-phosphoshikimate 1-carboxyvinyltransfera | ||||||
| PROTEIN:30S ribosomal subunit protein S16 | ||||||
| RNA:Gln tRNA | ||||||
| PROTEIN:DNA gyrase B subunit | ||||||
| PROTEIN:glucose-inhibited division protein B | ||||||
| PROTEIN:putative aspartate aminotransferase | ||||||
| PROTEIN:50S ribosomal subunit protein L32 | ||||||
| PROTEIN:putative pyruvate dehydrogenase E1 compone | ||||||
| PROTEIN:RNA polymerase sigma factor rpoD | ||||||
| PROTEIN:polynucleotide phosphorylase/polyadenylase | ||||||
| PROTEIN:30S ribosomal subunit protein S15 | ||||||
| PROTEIN:ubiquinone/menaquinone biosynthesis methyl | ||||||
| PROTEIN:50S ribosomal subunit protein L31 | ||||||
| PROTEIN:30S ribosomal protein S12 | ||||||
| PROTEIN:30S ribosomal protein S7 | ||||||
| PROTEIN:elongation factor G | ||||||
| PROTEIN:30S ribosomal subunit protein S10 | ||||||
| PROTEIN:50S ribosomal subunit protein L3 | ||||||
| PROTEIN:50S ribosomal subunit protein L4 | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:50S ribosomal protein L2 | ||||||
| PROTEIN:30S ribosomal subunit protein S19 | ||||||
| PROTEIN:50S ribosomal subunit protein L22 | ||||||
| PROTEIN:30S ribosomal subunit protein S3 | ||||||
| PROTEIN:50S ribosomal protein L16 | ||||||
| PROTEIN:30S ribosomal subunit protein S17 | ||||||
| PROTEIN:50S ribosomal subunit protein L14 | ||||||
| PROTEIN:50S ribosomal subunit protein L5 | ||||||
| PROTEIN:30S ribosomal subunit protein S14 | ||||||
| PROTEIN:30S ribosomal subunit protein S8 | ||||||
| PROTEIN:50S ribosomal subunit protein L6 | ||||||
| PROTEIN:50S ribosomal subunit protein L18 | ||||||
| PROTEIN:30S ribosomal subunit protein S5 | ||||||
| PROTEIN:50S ribosomal subunit protein L15 | ||||||
| PROTEIN:preprotein translocase SecY subunit | ||||||
| PROTEIN:translation initiation factor IF-1 | ||||||
| PROTEIN:50S ribosomal subunit protein L36 | ||||||
| PROTEIN:30S ribosomal subunit protein S13 | ||||||
| PROTEIN:30S ribosomal subunit protein S11 | ||||||
| PROTEIN:30S ribosomal subunit protein S4 | ||||||
| PROTEIN:DNA-directed RNA polymerase, alpha subunit | ||||||
| PROTEIN:50S ribosomal subunit protein L17 | ||||||
| PROTEIN:diaminopimelate epimerase | ||||||
| PROTEIN:S-adenosyl-methyltransferase MraW | ||||||
| PROTEIN:putative delta-1-pyrroline-5-carboxylate d | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:putative DNA mismatch repair protein MutL | ||||||
| PROTEIN:argininosuccinate lyase | ||||||
| RNA:Arg tRNA | ||||||
| PROTEIN:pyruvate dehydrogenase E1 component, alpha | ||||||
| PROTEIN:dihydrolipoamide acyltransferase E2 compon | ||||||
| PROTEIN:TerC family integral membrane protein | ||||||
| PROTEIN:glyceraldehyde 3-phosphate dehydrogenase | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:putative tRNA:rRNA methyltransferase | ||||||
| PROTEIN:phenylalanyl-tRNA synthetase alpha subunit | ||||||
| PROTEIN:threonine dehydratase | ||||||
| PROTEIN:ketol-acid reductoisomerase | ||||||
| PROTEIN:putative acetolactate synthase small subun | ||||||
| PROTEIN:putative acetolactate synthase large subun | ||||||
| PROTEIN:dihydroxy-acid dehydratase |
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Last modified: 4/05/2010.