The Microbial Promoter Database
| NCBI ID : NC_013123 Version : NC_013123.1 Clade: Bacteria-Bacteroidetes Create Date: 21/08/09 Update Date: 22/10/10 | Genome size: 276984 nts %GC content: 22.6 %Coding (including protein and RNA): 92.65 No. of protein coding genes: 242 No. of RNA coding genes: 34 | No of Adenine(A) Bases : 108587 No of Guanine(G) Bases : 32763 No of Thymine(T) Bases : 105812 No of Cytosine(C) Bases : 29822 |
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| Gene ID | Gene name | Left end position |
Right end position |
Length | Transcription direction |
Gene Product |
|---|---|---|---|---|---|---|
| PROTEIN:lipoyl-[acyl-carrier-protein]-protein-N-li | ||||||
| PROTEIN:putative fumarate hydratase | ||||||
| PROTEIN:putative inner membrane protein translocas | ||||||
| PROTEIN:valyl-tRNA synthetase | ||||||
| PROTEIN:DNA polymerase III subunit beta | ||||||
| PROTEIN:phenylalanyl-tRNA synthetase subunit beta | ||||||
| PROTEIN:3-dehydroquinate synthase | ||||||
| PROTEIN:putative partial DNA gyrase A subunit | ||||||
| PROTEIN:putative ribosomal protein S1 | ||||||
| PROTEIN:putative O-methyltransferase family protei | ||||||
| PROTEIN:putative type II NADH dehydrogenase | ||||||
| PROTEIN:transcription termination factor Rho | ||||||
| PROTEIN:peptide chain release factor 1 | ||||||
| PROTEIN:3-dehydroquinate dehydratase | ||||||
| PROTEIN:putative ATP synthase F1, epsilon subunit | ||||||
| PROTEIN:F0F1 ATP synthase subunit beta | ||||||
| PROTEIN:dimethyladenosine transferase | ||||||
| RNA:Met tRNA | ||||||
| PROTEIN:isoleucyl-tRNA synthetase | ||||||
| PROTEIN:putative signal peptidase | ||||||
| RNA:Asn tRNA | ||||||
| PROTEIN:GTP-binding protein LepA | ||||||
| PROTEIN:putative DNA polymerase III subunit delta' | ||||||
| PROTEIN:putative peptidase U32 | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:glutaminyl-tRNA synthetase | ||||||
| PROTEIN:tRNA uridine 5-carboxymethylaminomethyl mo | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:putative methyltransferase | ||||||
| RNA:Cys tRNA | ||||||
| PROTEIN:ribose-phosphate pyrophosphokinase | ||||||
| PROTEIN:50S ribosomal protein L25 | ||||||
| PROTEIN:methionyl-tRNA synthetase | ||||||
| PROTEIN:prolipoprotein diacylglyceryl transferase | ||||||
| PROTEIN:glutamyl-tRNA synthetase | ||||||
| PROTEIN:ATP synthase F1 subunit gamma | ||||||
| PROTEIN:ATP synthase F1 subunit alpha | ||||||
| PROTEIN:ATP synthase F1, delta subunit | ||||||
| PROTEIN:ATP synthase F0 B subunit | ||||||
| PROTEIN:ATP synthase F0 subunit c | ||||||
| PROTEIN:ATP synthase F0 subunit a | ||||||
| PROTEIN:putative aspartate kinase | ||||||
| PROTEIN:MarC family integral membrane protein | ||||||
| PROTEIN:3-isopropylmalate dehydrogenase | ||||||
| PROTEIN:3-isopropylmalate dehydratase small subuni | ||||||
| PROTEIN:3-isopropylmalate dehydratase large subuni | ||||||
| PROTEIN:2-isopropylmalate synthase | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:tyrosyl-tRNA synthetase | ||||||
| PROTEIN:leucyl-tRNA synthetase | ||||||
| PROTEIN:putative transketolase, N-terminal subunit | ||||||
| PROTEIN:putative transketolase, C-terminal subunit | ||||||
| RNA:Phe tRNA | ||||||
| PROTEIN:seryl-tRNA synthetase | ||||||
| PROTEIN:50S ribosomal protein L28 | ||||||
| PROTEIN:50S ribosomal protein L33 | ||||||
| RNA:His tRNA | ||||||
| PROTEIN:putative RNA pseudouridine synthase fragme | ||||||
| PROTEIN:tRNA pseudouridine synthase A | ||||||
| PROTEIN:DNA-directed RNA polymerase subunit beta' | ||||||
| PROTEIN:DNA-directed RNA polymerase subunit beta | ||||||
| PROTEIN:50S ribosomal protein L7/L12 | ||||||
| PROTEIN:50S ribosomal protein L10 | ||||||
| PROTEIN:50S ribosomal protein L1 | ||||||
| PROTEIN:50S ribosomal protein L11 | ||||||
| RNA:Trp tRNA | ||||||
| PROTEIN:elongation factor Tu | ||||||
| RNA:Gly tRNA | ||||||
| RNA:Tyr tRNA | ||||||
| RNA:Thr tRNA | ||||||
| PROTEIN:cytochrome c | ||||||
| PROTEIN:molybdopterin oxidoreductase, iron-sulfur | ||||||
| PROTEIN:molybdopterin oxidoredutase membrane subun | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:cysteine desulfurase SufE subunit | ||||||
| PROTEIN:putative polyprenyl synthetase | ||||||
| RNA:small subunit ribosomal RNA (16S rRNA) | ||||||
| RNA:Ile tRNA | ||||||
| RNA:Ala tRNA | ||||||
| RNA:large subunit ribosomal RNA (23S rRNA) | ||||||
| RNA:5S ribosomal RNA (5S rRNA) | ||||||
| PROTEIN:succinyl-CoA synthetase subunit beta | ||||||
| PROTEIN:N terminal region of DNA polymerase III su | ||||||
| PROTEIN:putative Sec-independent tatA/E protein tr | ||||||
| PROTEIN:DNA mismatch repair protein MutS | ||||||
| RNA:Gly tRNA | ||||||
| RNA:Leu tRNA | ||||||
| PROTEIN:elongation factor Ts | ||||||
| PROTEIN:30S ribosomal protein S2 | ||||||
| PROTEIN:30S ribosomal protein S9 | ||||||
| PROTEIN:50S ribosomal protein L13 | ||||||
| PROTEIN:molecular chaperone DnaK | ||||||
| PROTEIN:translation initiation factor 3 | ||||||
| PROTEIN:50S ribosomal protein L35 | ||||||
| PROTEIN:50S ribosomal protein L20 | ||||||
| PROTEIN:peptide deformylase | ||||||
| PROTEIN:Holliday junction resolvase-like protein | ||||||
| PROTEIN:2,3,4,5-tetrahydropyridine-2,6-carboxylate | ||||||
| PROTEIN:branched-chain amino acid aminotransferase | ||||||
| PROTEIN:putative tRNA nucleotidyltransferase | ||||||
| PROTEIN:tRNA (5-methylaminomethyl-2-thiouridylate) | ||||||
| PROTEIN:chaperone protein dnaJ | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:dihydrolipoamide dehydrogenase | ||||||
| PROTEIN:replicative DNA helicase | ||||||
| PROTEIN:M42 family metalloprotease | ||||||
| PROTEIN:putative ribosome-binding factor A | ||||||
| PROTEIN:phosphate acetyltransferase | ||||||
| PROTEIN:acetate kinase | ||||||
| PROTEIN:tRNA modification GTPase TrmE | ||||||
| RNA:Val tRNA | ||||||
| PROTEIN:putative bifunctional DNA polymerase III s | ||||||
| PROTEIN:putative bifunctional argininosuccinate sy | ||||||
| PROTEIN:N-acetyl-gamma-glutamyl-phosphate reductas | ||||||
| PROTEIN:acetylornithine aminotransferase | ||||||
| PROTEIN:carbamoyl phosphate synthase small subunit | ||||||
| PROTEIN:carbamyl phosphate synthase large subunit | ||||||
| PROTEIN:putative ornithine carbamoyltransferase | ||||||
| PROTEIN:acetylglutamate kinase | ||||||
| PROTEIN:putative acetylornithine deacetylase (ArgE | ||||||
| RNA:Asp tRNA | ||||||
| RNA:Lys tRNA | ||||||
| PROTEIN:shikimate kinase | ||||||
| PROTEIN:putative tRNA(Ile)-lysidine synthetase | ||||||
| PROTEIN:tryptophan synthase subunit alpha | ||||||
| PROTEIN:bifunctional phosphoribosylanthranilate is | ||||||
| PROTEIN:indole-3-glycerol phosphate synthase activ | ||||||
| PROTEIN:anthranilate phosphoribosyltransferase | ||||||
| PROTEIN:anthranilate synthase component II | ||||||
| PROTEIN:anthranilate synthase component I | ||||||
| PROTEIN:prolyl-tRNA synthetase | ||||||
| PROTEIN:ATP-dependent protease La | ||||||
| PROTEIN:diaminopimelate decarboxylase | ||||||
| RNA:Ser tRNA | ||||||
| PROTEIN:chorismate synthase | ||||||
| PROTEIN:heat shock protein 90 | ||||||
| PROTEIN:putative MiaB-like protein | ||||||
| PROTEIN:translocase secA | ||||||
| PROTEIN:50S ribosomal protein L19 | ||||||
| PROTEIN:ferredoxin-like protein | ||||||
| PROTEIN:glycyl-tRNA synthetase | ||||||
| PROTEIN:1,4-dihydroxy-2-naphthoate octaprenyltrans | ||||||
| PROTEIN:threonine synthase | ||||||
| PROTEIN:homoserine kinase | ||||||
| PROTEIN:aspartokinase/homoserine dehydrogenase | ||||||
| RNA:Arg tRNA | ||||||
| RNA:Pro tRNA | ||||||
| RNA:Ser tRNA | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:putative cytochrome c oxidase subunit ccoP | ||||||
| PROTEIN:bifunctional cytochrome c oxidase subunit | ||||||
| PROTEIN:cation transport ATPase, E1-E2 family prot | ||||||
| PROTEIN:GTP-binding protein EngA | ||||||
| PROTEIN:lipoyl synthase | ||||||
| PROTEIN:50S ribosomal protein L34 | ||||||
| PROTEIN:succinyl-CoA synthetase subunit alpha | ||||||
| PROTEIN:CAAX amino terminal protease family protei | ||||||
| RNA:Leu tRNA | ||||||
| RNA:Leu tRNA | ||||||
| PROTEIN:tryptophanyl-tRNA synthetase | ||||||
| PROTEIN:putative outer membrane protein | ||||||
| PROTEIN:putative ribosome recycling factor | ||||||
| PROTEIN:asparaginyl-tRNA synthetase | ||||||
| RNA:Met tRNA | ||||||
| PROTEIN:50S ribosomal protein L21 | ||||||
| PROTEIN:50S ribosomal protein L27 | ||||||
| RNA:- | ||||||
| PROTEIN:30S ribosomal protein S6 | ||||||
| PROTEIN:30S ribosomal protein S18 | ||||||
| PROTEIN:50S ribosomal protein L9 | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:dihydrodipicolinate synthase | ||||||
| PROTEIN:peptide chain release factor 2 | ||||||
| PROTEIN:dihydrodipicolinate reductase | ||||||
| PROTEIN:signal peptidase I | ||||||
| PROTEIN:30S ribosomal protein S21 | ||||||
| PROTEIN:shikimate 5-dehydrogenase | ||||||
| PROTEIN:GTP-binding protein | ||||||
| PROTEIN:dihydrolipoamide dehydrogenase | ||||||
| RNA:Leu tRNA | ||||||
| PROTEIN:hypothetical protein | ||||||
| RNA:Met tRNA | ||||||
| PROTEIN:putative alanyl-tRNA synthetase fragment | ||||||
| PROTEIN:2-oxoglutarate dehydrogenase, E1 component | ||||||
| PROTEIN:2-oxoglutarate dehydrogenase, E2 component | ||||||
| PROTEIN:putative Sec-independent protein transloca | ||||||
| PROTEIN:SsrA (tmRNA)-binding protein | ||||||
| PROTEIN:putative ATP transporter | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:chaperonin GroEL | ||||||
| PROTEIN:10 kDa chaperonin GroES | ||||||
| PROTEIN:RNA modification protein, MiaB family | ||||||
| PROTEIN:FeS assembly protein SufB | ||||||
| PROTEIN:putative FeS assembly ATPase SufC | ||||||
| PROTEIN:putative FeS assembly protein SufD | ||||||
| PROTEIN:cysteine desulphurase, SufS | ||||||
| PROTEIN:transcription elongation factor NusA | ||||||
| PROTEIN:translation initiation factor IF-2 | ||||||
| PROTEIN:putative bifunctional phospho-2-dehydro-3- | ||||||
| PROTEIN:aminotransferase | ||||||
| PROTEIN:putative prephenate dehydratase | ||||||
| PROTEIN:aspartate semialdehyde dehydrogenase | ||||||
| PROTEIN:30S ribosomal protein S20 | ||||||
| RNA:Glu tRNA | ||||||
| PROTEIN:3-phosphoshikimate 1-carboxyvinyltransfera | ||||||
| PROTEIN:putative 16S rRNA processing protein RimM | ||||||
| PROTEIN:30S ribosomal protein S16 | ||||||
| RNA:Gln tRNA | ||||||
| PROTEIN:putative transcription elongation factor G | ||||||
| PROTEIN:DNA gyrase B subunit | ||||||
| PROTEIN:glucose-inhibited division protein B | ||||||
| PROTEIN:putative aspartate aminotransferase | ||||||
| PROTEIN:50S ribosomal protein L32 | ||||||
| PROTEIN:putative pyruvate dehydrogenase E1 compone | ||||||
| PROTEIN:fructose-bisphosphate aldolase | ||||||
| PROTEIN:RNA polymerase sigma factor rpoD | ||||||
| PROTEIN:polynucleotide phosphorylase/polyadenylase | ||||||
| PROTEIN:30S ribosomal protein S15 | ||||||
| PROTEIN:ubiquinone/menaquinone biosynthesis methyl | ||||||
| PROTEIN:50S ribosomal protein L31 | ||||||
| PROTEIN:30S ribosomal protein S12 | ||||||
| PROTEIN:30S ribosomal protein S7 | ||||||
| PROTEIN:elongation factor G | ||||||
| PROTEIN:30S ribosomal protein S10 | ||||||
| PROTEIN:50S ribosomal protein L3 | ||||||
| PROTEIN:50S ribosomal protein L4 | ||||||
| PROTEIN:putative 50S ribosomal protein L23 | ||||||
| PROTEIN:50S ribosomal protein L2 | ||||||
| PROTEIN:30S ribosomal protein S19 | ||||||
| PROTEIN:50S ribosomal protein L22 | ||||||
| PROTEIN:30S ribosomal protein S3 | ||||||
| PROTEIN:50S ribosomal protein L16 | ||||||
| PROTEIN:30S ribosomal protein S17 | ||||||
| PROTEIN:50S ribosomal protein L14 | ||||||
| PROTEIN:putative 50S ribosomal protein L24 | ||||||
| PROTEIN:50S ribosomal protein L5 | ||||||
| PROTEIN:30S ribosomal protein S14 | ||||||
| PROTEIN:30S ribosomal protein S8 | ||||||
| PROTEIN:50S ribosomal protein L6 | ||||||
| PROTEIN:50S ribosomal protein L18 | ||||||
| PROTEIN:30S ribosomal protein S5 | ||||||
| PROTEIN:50S ribosomal protein L15 | ||||||
| PROTEIN:translation initiation factor IF-1 | ||||||
| PROTEIN:50S ribosomal protein L36 | ||||||
| PROTEIN:30S ribosomal protein S13 | ||||||
| PROTEIN:30S ribosomal protein S11 | ||||||
| PROTEIN:30S ribosomal protein S4 | ||||||
| PROTEIN:DNA-directed RNA polymerase subunit alpha | ||||||
| PROTEIN:50S ribosomal protein L17 | ||||||
| PROTEIN:diaminopimelate epimerase | ||||||
| RNA:- | ||||||
| PROTEIN:putative delta-1-pyrroline-5-carboxylate d | ||||||
| PROTEIN:putative DNA mismatch repair protein MutL | ||||||
| PROTEIN:argininosuccinate lyase | ||||||
| PROTEIN:lysyl-tRNA synthetase | ||||||
| RNA:Arg tRNA | ||||||
| PROTEIN:pyruvate dehydrogenase E1 component subuni | ||||||
| PROTEIN:dihydrolipoamide acyltransferase E2 compon | ||||||
| PROTEIN:integral membrane protein TerC family | ||||||
| PROTEIN:glyceraldehyde 3-phosphate dehydrogenase | ||||||
| PROTEIN:hypothetical protein | ||||||
| PROTEIN:putative DNA polymerase III subunit delta | ||||||
| PROTEIN:thioredoxin-disulfide reductase | ||||||
| PROTEIN:putative tRNA:rRNA methyltransferase | ||||||
| PROTEIN:phenylalanyl-tRNA synthetase subunit alpha | ||||||
| PROTEIN:threonine dehydratase | ||||||
| PROTEIN:ketol-acid reductoisomerase | ||||||
| PROTEIN:putative acetolactate synthase small subun | ||||||
| PROTEIN:putative acetolactate synthase large subun | ||||||
| PROTEIN:dihydroxy-acid dehydratase |
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Last modified: 15/06/2012.