References

Allawi H T and SantaLucia J Jr (1997) Thermodynamics and NMR of internal G.T mismatches in DNA; Biochemistry 36:10581-10594. PDF


SantaLucia J Jr (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbour thermodynamics; Proc. Natl. Acad. Sci. USA  95:1460-1465. PDF


The Arabidopsis Genome Initiative (2000). Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.; Nature,408(Pubmed).


International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome; Nature 436:793-800. (PubMed)


Kanhere A and Bansal M (2005a) Structural properties of promoters: similarities and differences between prokaryotes and eukaryotes; Nucleic Acids Res. 33:3165-3175. PDF


Kanhere A and Bansal M (2005b) A novel method for prokaryotic promoter prediction based on DNA stability; BMC Bioinformatics 6:1. PDF


Rangannan V and Bansal M (2007) Identification and annotation of promoter regions in microbial genome sequences on the basis of DNA stability; J. Biosci. 32:851-862. PDF


Tanaka T et al (2008) The Rice Annotation Project Database (RAP-DB): 2008 update; Nucleic Acid Research 36:D1028-D1033. (PubMed)


Morris R T, O'Connor T R and Wyrick J J (2008) Osiris: an integrated promoter database for Oryza sativa L.; Bioinformatics 24:2915-2917. (PubMed)


Rangannan V and Bansal M (2009) Relative stability of DNA as a generic criterion for promoter prediction: whole genome annotation of microbial genomes with varying nucleotide base composition; Mol. BioSyst., 2009, 5, 1758-1769 PDF


Rangannan V and M.Bansal (2010) High-quality annotation of promoter regions for 913 bacterial genomes; Bioinformatics 26:3043-3050 PDF


 


 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

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