NUPARM:
Bansal,M., D. Bhattacharya, and B. Ravi. NUPARM and NUCGEN: software for analysis and generation of sequence dependent nucleic acid structures.1995 Comput. Appl. Biosci. 11:281-287 (Primary )

Bhattacharya D, Bansal M. A general procedure for generation of curved DNA molecules. J Biomol Struct Dyn. 1988 Aug;6(1):93-104

Bhattacharya, D., and M. Bansal. A self-consistent formulation for analysis and generation of non-uniform DNA structures.J. Biomol. Struct. Dyn. 1989 6:635-653

Bhattacharyya D, Bansal M. Local variability and base sequence effects in DNA crystal structures. JBiomol Struct Dyn. 1990 Dec;8(3):539-572

Bhattacharya, D., and M.Bansal. Groove Width and Depths of B-DNA Structures Depend on Local Variation is Slide J. Biomol. Struct. Dynam. 1992 10, 213-226



BPFIND:
S. Mukherjee, M. Bansal and D.Bhattacharyya. Conformational specificity of non-canonical base pairs and higher order structures in nucleic acids: crystal 5 structure database analysis, 2006 J. Comp. Aided Mol. Des. 20, 629-45