ABOUT THE PROGRAM:
Output are written to PRM
and COOR files:
5. Details of the Output files
contains all the parameters calculated.
6. Example: Torsion angle outputs towards the end of the output.prm file
BACKBONE AND GLYCOSIDIC TORSION ANGLES
P-O5' O5'-C5' C5'-C4' C4'-C3' C3'-O3' O3'- P C1'-N
ALPHA BETA GAMMA DELTA EPS ZETA CHI
TR 1 G 0.0 0.0 52.6 87.7 -166.1 -75.4 -164.5 output
TR 2 C -63.2 -170.6 56.4 149.8 -163.6 -97.8 -118.2 output
The program does not recognize new PDB Residue name form i.e."DG","DT" or "RG","RU" etc. In that case do a simple substitution of all the Residue name to corresponding Base name as G, T, or G, U, etc to the PDB text file. Windows executables should be executed in "cmd" and output can be viewed using notepad.