[UNDER CONSTRUCTTION]

ABOUT THE PROGRAM:

DOWNLOAD:

 Output are written to  PRM and COOR files:
      All the questions & answers are written into a file    "RUN.ANS"
      Results of the calculation are written into:
      adna.prm                                                    
      Reoriented atomic coordinates written into:
      adna.coor

5. Details of the Output files

  "PRM" file contains all the parameters calculated.
  "COOR" is created if the option of reorienting the molecule about the global helix axis is used.  It contains the transformed coordinates, as well as related residue and atom information. It can also be used as input for NUPARM.

6. Example: Torsion angle outputs towards the end of the output.prm file

       BACKBONE AND GLYCOSIDIC TORSION ANGLES

                    P-O5'    O5'-C5'    C5'-C4'      C4'-C3'  C3'-O3'  O3'- P    C1'-N

                   ALPHA     BETA    GAMMA    DELTA     EPS      ZETA    CHI

TR    1 G         0.0            0.0     52.6             87.7     -166.1    -75.4   -164.5 output

TR    2 C       -63.2        -170.6    56.4           149.8      -163.6    -97.8   -118.2 output

NOTE:

The program does not recognize new PDB Residue name form i.e."DG","DT" or "RG","RU"  etc. In that case do a simple substitution of all the Residue name to corresponding Base name as G, T, or G, U, etc to the PDB text file. Windows executables should be executed in "cmd" and output can be viewed using notepad.