PromPredict
(Web server for promoter identification in genomic DNA sequence )
 
 

 
 
 
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PromPredict - Downloads:

Promoter prediction over multiple sequences

Linux executable :: PromPredict_mulseq

Windows executable ::
PromPredict_mulseq.exe

Sample Input file :
sample_seq.txt

Sample output files generated :

        sample_seq_PPde.txt , sample_seq_stb.txt , sample_seq_GCstat.txt

Promoter prediction over Genome sequence

Linux executable :
         Version 1 ::
PromPredict_genome_V1  (For Genome Sequence < 10MB)
         Version 2 :: PromPredict_genome_V2  (For Genome Sequence > 10MB)

Windows executable :
         Version 1 ::
PromPredict_genome_V1.exe  (For Genome Sequence < 10MB)
         Version 2 :: PromPredict_genome_V2.exe  (For Genome Sequence > 10MB)

Sample Input file :
sample_genome.fna

Sample output files generated :


         Version 1
        sample_genome_PPde.txt , sample_genome_stb.txt , sample_genome_GCstat.txt

         Version 2
         sample_genome_PPde.txt , sample_genome_stb.txt , sample_genome_GCstat.txt

 

Note :: Reliability classification of predicted promoter region will not be available in Version 2

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Questions or problems regarding this web site should be directed to [mb@mbu.iisc.ernet.in].
Copyright © 2008 [Molecular Biophysics Unit,IISC]. All rights reserved.

Last modified: 08/04/2011.