Prof. Manju Bansal Lab, MBU, IISc, Bangalore, India.

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List of publications of Prof. Manju Bansal (Updated: 20 Feb., 2017):

a) Research Publications in Journals (full):
      

RNAHelix: computational modeling of nucleic acid structures with Watson-Crick and non-canonical base pairs, D.Bhattacharyya, S.Halder, S.Basu, D.Mukherjee, P.Kumar and M.Bansal (2017) J Comput Aided Mol Des. 33,219-235.(Link to paper at publisher's site)

DNA structural features of eukaryotic TATA-containing and TATA-less promoters, V.R.Yella and M.Bansal (2017) FEBS Openbio. 7,324-334. (Link to paper at publisher's site)

Data on diverse roles of helix perturbations in membrane proteins, A.Shelar and M.Bansal (2016) Data in Brief. 9, 781-802. (Link to paper at publisher's site)

Unveiling DNA structural features of promoters associated with various types of TSSs in prokaryotic transcriptomes and their role in gene expression, A.Kumar and M.Bansal (2016) DNA Res. DOI:10.1093/dnares/dsw045 (Link to paper at publisher's site)

The Role of Sequence in Altering the Unfolding Pathway of an RNA Pseudoknot: A Steered Molecular Dynamics Study, A.Gupta and M.Bansal (2016) Phys. Chem. Chem. Phys. 18, 28767-28780 (Link to paper at publisher's site)

Structural and functional analyses of PolyProline-II helices in globular proteins, P.Kumar and M.Bansal (2016) J.Structural Biology, 196(3),414-425. (Link to paper at publisher's site)

Structural features of DNA are conserved in the promoter region of orthologous genes across different strains of H. pylori, A.Kumar, V.Manivelan, and M.Bansal (2016)FEMS Microbiology Letters , 363, 1-10. (Link to paper at publisher's site)

Helix perturbations in membrane proteins assist in inter-helical interactions and optimal helix positioning in the bilayer. A.Shelar, and M.Bansal (2016) Biochimica et Biophysica Acta (BBA)-Biomembranes. 1858(11) 2804-2817. (Link to paper at publisher's site)

Genome-wide targets regulated by OsMADS1 in rice florets reveal its DNA recognition properties. I.Khanday, S.Das, G. Chongloi, M.Bansal U. Grossniklaus and U.Vijayraghavan (2016) Plant Phys, 172(1), 372-388. (Link to paper at publisher's site)

Insights into the Structural Dynamics of Nucleocytoplasmic Transport of tRNA by Exportin-t. A.Gupta,S.Kailasam and M.Bansal (2016) Biophysical journal, 110(6), 1264-1279. (Link to paper at publisher's site)

New insight into the architecture of oxy-anion pocket in unliganded conformation of GAT domains: A MD-simulation study Hridoy R. Bairagya and M.Bansal, (2016) Proteins, 84(3),360-73. (Link to paper at publisher's site)

Conformational stabilities of iminoallantoin and its base pairs in DNA: implications for mutagenicity. N.R Jena, M.Bansal and PC Mishra. (2016)Phys. Chem. Chem. Phys., , 18(18),12774-12783.(Link to paper at publisher's site)

Dissecting π-helices: Sequence, Structure and Function. P.Kumar and M.Bansal, (2015) FEBS J, 282, 4415-4432. (Link to paper at publisher's site)

Identification of local variations within secondary structures of proteins. P.Kumar and M.Bansal, (2015) Acta Crystallogr. Sec.D, 71, 1077-1086. (Link to paper at publisher's site)

Ligand 5,10,15,20-Tetra(N-methyl-4-pyridyl)porphine (TMPyP4) Prefers the Parallel Propeller-Type Human Telomeric G-Quadruplex DNA over Its Other Polymorphs. A.Ali, M.Bansal,and S.Bhattacharyaa (2015) J. Phys. Chem. B119(1),5-14. (Link to paper at publisher's site)

Stacking Interactions in RNA and DNA: Roll-Slide Energy Hyperspace for Ten Unique Dinucleotide Steps, S.Mukherjee, S.Kailasam, D.Bhattacharyya, M.Bansal (2015) Biopolymers, 103,134-147. (Link to paper at publisher's site)

Local Structural and Environmental Factors Define the Efficiency of an RNA Pseudoknot Involved in Programmed Ribosomal Frameshift Process, A.Gupta and M.Bansal (2014)J. Phys. Chem. B, 118 (41), pp 11905-11920 (Link to paper at publisher's site)

Sequence and conformational preferences at termini of α-helices in membrane proteins: Role of the helix environment, A. Shelar, M.Bansal (2014) Proteins: Structure, Function, and Bioinformatics, DOI: 10.1002/prot.24696 (Link to paper at publisher's site)

MolBridge: A program for identifying non-bonded interactions in small molecules and biomolecular structures, P.Kumar, S.Kailasam, S.Chakraborty and M.Bansal (2014) J Appl Crystallogr, 47,5, 1772-1776 (Link to paper at publisher's site)

Sequence dependent variations in RNA duplex are related to non-canonical hydrogen bond interactions in dinucleotide steps, S.Kailasam, D.Bhattacharyya, M.Bansal (2014) BMC Research Notes, 7,1,83 (Link to paper at publisher's site)

Role of DNA sequence based structural features of promoters in transcription initiation and gene expression, M.Bansal, A.Kumar, V.R.Yella (2014) Current Opinion in Structural Biology, 25,77-85 (Link to paper at publisher's site)

Energy hyperspace for stacking interaction in AU/AU dinucleotide step: Dispersion-corrected density functional theory study, S.Mukherjee, S.Kailasam, M.Bansal, D.Bhattacharyya (2014) Biopolymers, 101,1,107-120 (Link to paper at publisher's site)

DNA structural features and architecture of promoter regions play a role in gene responsiveness of S. cerevisiae, V.R.Yella and M.Bansal (2013) Journal of Bioinformatics and Computational Biology, 11,6,1343001. (Link to paper at publisher's site)

HELANAL-Plus: a web server for analysis of helix geometry in protein structures. P.Kumar and M.Bansal, (2012) J Biomol Struct Dyn., 30, 773-783. (Link to paper at publisher's site)

Characterization of structural and free energy properties of promoters associated with Primary and Operon TSS in Helicobacter pylori genome and their orthologs. A.Kumar and M.Bansal (2012)Journal of Biosciences.,37,423-431.(PDF)

PROMBASE: A webresource for various genomic features and predicted promoters in prokaryotice genomes. V.Rangannan and M.Bansal (2011)BMC Research Notes. 4:257.(PDF)

Intrinsic structural variability of DNA allows multiple genomic encoding for nucleosomes. A.Marathe and M.Bansal (2011) Phys Life Review. 69-72. (PDF)

An ensemble of B-DNA dinucleotide geometries lead to characteristic nucleosomal DNA structure and provide plasticity required for gene expression. A.Marathe and M.Bansal (2011) BMC Struct Biol. 11(1).(PDF)

DNA free energy based promoter prediction and comparative analysis of Arabidopsis and rice genomes C.Morey, S.Mookherjee, G.Rajasekaran and M.Bansal (2011) Plant Physiology 156:1300-1315. (PDF)

Mutagenicity associated with O6-methylguanine-DNA damage and mechanism of nucleotide flipping by AGT during repair N.R.Jena and M.Bansal (2011) Phys. Biol. 8(4)046007. (PDF)

The 5-methyl group in thymine dynamically influences the structure of A-tracts in DNA at the local and global level. A.Marathe and M.Bansal (2010) J Phys Chem B 114(16):5534-46 (PDF)

High-quality annotation of promoter regions for 913 bacterial genomes, V.Rangannan, M.Bansal (2010) Bioinformatics 26 (24): 3043-3050.(PDF)

Relative stability of DNA as a generic criterion for promoter prediction: whole genome annotation of microbial genomes with varying nucleotide base composition, V.Rangannan and M.Bansal (2009) Mol. BioSyst. 5:1758-1769.(PDF).

Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifs, A.Marathe, D.Karandur and M.Bansal (2009) BMC Struct. Biol. 9: 24 (doi:10.1186/1472-6807-9-24). (PDF)

Identification and annotation of promoter regions in microbial genome sequences on the basis of DNA stability, V.Rangannan and M.Bansal (2007) J. Biosci 32, 851-862. (PDF)

Conformational specificity of non-canonical base pairs and higher order structure in nucleic acids: crystal structure database analysis. S.Mukherjee, M.Bansal (2006) D.Bhattacharyya. J Comput Aided Mol Des. 20:629-645. (PDF)

Structural properties of promoters: similarities and differences between prokaryotes and eukaryotes, A. Kanhere and M.Bansal (2005) Nucleic Acids Res. 33, 3165-3175. (PubMed) (PDF)

Sequence preference for BI/BII conformations in DNA: MD and crystal structure data analysis A. Madhumalar and M.Bansal (2005) J. Biomol. Struct. Dynam. 23, 13-27.
 (PDF)

A novel method for prokaryotic promoter prediction based on DNA stability A. Kanhere and M.Bansal (2005) BMC Bioinformatics 6:1
 (PDF)

Collagen Structure: The Madras Triple Helix and the Current Scenario. A.Bhattacharjee and M.Bansal (2005). IUBMB Life, 57(3): 161-172. (PDF)

DNA Bending and Curvature: A Turning Point in DNA Function, A. Kanhere and M.Bansal (2004) Proc. Indian Natl. Sci. Acad. B70, 239-254. (PDF)

Structural insights into effect of hydration and ions on A-tract DNA - A molecular Dynamics Study, A. Madhumalar and M.Bansal  (2003) Biophys. J. 85, 1805-1816.
  (PDF)

Identification of the domains for DNA binding and transactivation function of C Protein from bacteriophage Mu, B.D. Paul, A. Kanhere, A. Chakraborty, M.Bansal and V. Nagaraja (2003) Proteins: Structure, Function and Genetics 52:272-282.
(PDF)

An assessment of three dinucleotide parameters to predict DNA curvature by quantitative comparison to experimental data, A. Kanhere and M.Bansal (2003) Nucleic Acids Res. 31, 2647-2658.
 (PDF)

A glossary of DNA structures from A to Z, A. Ghosh and M.Bansal (2003) Acta Crystallogr. Sec.D, 59, 620-626.
(PubMed)

Modelling studies on neurodegenerative disease causing triplet repeat sequences d(CGG/GCC) and d(CAG/CTG): Duplexes vs Quadruplexes, S. Chowdhury and M.Bansal (2001) J. Biosci. 26, 649-665. (PDF)

G-quadruplex structure can be stable with only some coordination sites being occupied: A six nanosecond molecular dynamics study, S. Chowdhury and M.Bansal (2001) J. Phys. Chem. 105, 7572-7578.(PDF)

Structural features of B-DNA dodecamer crystal structures: Influence of crystal packing versus base sequence, A. Ghosh and M.Bansal (2001) Ind. J. Biochem Biophys. 38, 7-15.
(PDF)

A nanosecond molecular dynamics study of antiparallel d(G)7 quadruplex structures: Effect of the coordinated cations, S. Chowdhury and M.Bansal (2001) J. Biomol. Struct. Dynam. 18, 647-669.   (PDF)

A standard reference frame for the description of Nucleic Acid Base-Pair Geometry. Wilma K. Olson, M.Bansal (2001), Stephen K. Burley Richard E. Dickerson, Mark Gerstein, Stephen C. Harvey Udo Heinemann, Xiang-Jun Lu, Stephen Neidle, Zippora Shakked Heinz Sklenar, Masashi Suzuki, Chang-Shung Tung, Eric Westhof  Cynthia Wolberger and Helen M. Berman. J. Mol. Biol. 313, 229-237 .(PDF)

Effect of coordinated ions on structure and flexibilty of parallel G-quadruplexes: A molecular dynamics study, S. Chowdhury and M.Bansal (2000) J. Biomol. Struct. Dynam. 18, 11-28. (PDF)

HELANAL: A program to characterise helix geometry in proteins, M.Bansal, S. Kumar and R. Velavan (2000) J. Biomol. Struct. Dynam. 17, 811-819.
  (PDF)

C-H..O hydrogen bonds bonds in minor groove of A-tracts in DNA double helices, A. Ghosh and M.Bansal (1999) J. Mol. Biol., 294, 1149-1158.
  (PDF)

Three centre C-H..O hydrogen bonds in DNA minor groove: Analysis of oligonucleotide crystal structures, A. Ghosh and M.Bansal (1999) Acta Cryst., D55, 2005-2012.
(PDF)


A new insight into the structure and stability of Hoogsteen hydrogen-bonded G-tetrad: an ab initio SCF study, J. Gu, J. Leszczynski and M.Bansal (1999) Chem. Phys. Letts., 311, 209-214. (PDF)

Molecular dynamics simulations on parallel and antiparallel C.G*G triplexes, M.Ravi Kiran and M.Bansal (1998) J. Biomol. Struct. Dynam., 16, 511-526.
(
PubMed)

Geometrical and sequence characteristics of a -helices  in globular proteins, S. Kumar and M.Bansal (1998) Biophys J., 75, 1935-1944. (PDF)

Dissecting α helices: Position specific analysis of a-helices
 in globular proteins, S. Kumar and M.Bansal (1998) Proteins: Structure, Function & Genetics, 31, 460-476. (PDF)

Sequence Independent Recombination Triple Helices: A Molecular Dynamics Study, M. Ravi Kiran and M.Bansal (1997) J. Biomol. Struct. Dynam., 15, 333-345.
(
PubMed)

A semi-empirical SCF-MO study on the base-pairing properties of 8-oxopurines: significance for mutagenicity Divi Venkateswarlu, R. H. Duncan Lyngdoh  and M.Bansal (1997). J. Chem. Soc., Perkin Trans. 2, 621-625. (PDF)

Structural and Sequence Characteristics of Long Alpha Helices in Globular Proteins, S. Kumar and M.Bansal (1996) Biophys. J. 71, 1574-1586.   (PDF)

Molecular Mechanics Studies of Homopolymeric and Mixed Sequence Py.Pu*Pu Triple Helices, M. Ravikiran and M.Bansal (1995) Ind. J. Biochem. Biophys., 32, 391-403.
(
PubMed)

Structural Polymorphism in d(T).d(A)*d(T) Triple Helices, M. Ravikiran and M.Bansal (1995) J. Biomol. Struct. Dynam., 13, 493-505. (
PubMed)


Chain folding and A:T Pairing in Human Telomeric DNA: A Model Building and Molecular Dynamics Study, D. Mohanty and M.Bansal (1995) Biophys. J., 69, 1046-1067.
  (PDF)

Molecular Modeling Studies on Amphotericin B and its Complex with Phospholipid, R.B.Anachi, M.Bansal, K.R.K.Easwaran, K.Namboodri and B.P.Gaber (1995) J. Biomol. Struct. Dynam., 12, 957-970.
(PubMed)

NUVIEW: Software for Display and Manipulation of Nucleic Acid Models, M.Bansal, D. Bhattacharyya and S. Vijaylakshmi (1995) CABIOS, 11, 289-292.
 (PDF)

NUPARM and NUCGEN: Software for Analysis and Generation of Sequence Dependent Nucleic Acid Structures, M.Bansal, D. Bhattacharyya and B.Ravi (1995) CABIOS, 11, 281-287.
  (PDF)

Conformational Polymorphism in Telomeric Structures: Loop Orientation and Interloop Pairing in d(G4TnG4), D. Mohanty and M.Bansal (1994) Biopolymers, 34, 1187-1211. (PDF)

Analysis of Base Sequence Dependent Variations in Secondary and Tertiary Structure of tRNA Molecules, D. Bhattacharyya and M.Bansal (1994) J. Biomol. Struct. Dynam., 11, 1251-1275.
(PubMed)

CA\TG Sequence at the 5'end of Oligo(A)-tracts Strongly Modulates DNA Curvature, A. K. Nagaich, D. Bhattacharyya, S. K. Brahmachari and M.Bansal (1994) J. Biol. Chem., 269, 7824-7833. (PDF)

Conformational Polymorphism in G-tetraplex Structures: Strand Reversal by Base Flipover or Sugar Flipover, D. Mohanty and M.Bansal (1993) Nucleic Acids Res., 21, 1767-1774. (PubMed) (PDF)

Two forms of PF1 INOVIRUS: X-ray diffraction studies on a structural phase transition and a calculated libration normal mode of the assymetric unit, D.A. Marvin, C. Nave, M.Bansal, R.D. Hale, and E.K.H. Salje (1992) Phase Transitions, 39, 45-80.

Hairpin and parallel quartet structures for telomeric sequences, P. Balagurumoorthy, S.K. Brahmachari, D. Mohanty, M.Bansal and V. Sasisekharan (1992) Nucleic Acids Res. 20, 4061-4067.
(PubMed) (PDF)

Groove width and depth of B-DNA structures depend on local variation in slide, D. Bhattacharyya and M.Bansal (1992) J. Biomol. Struct. Dynam. 10, 213-226.
(PubMed)

Double helix conformation, groove dimensions and ligand binding potential of a G/C stretch in B-DNA, U. Heinemann, C. Alings and M.Bansal (1992) EMBO J, 11, 1931-1939.
(PubMed) (PDF)

DNA polymorphism and local variation in base-pair orientation: A theoretical rationale, D.Mohanty and M.Bansal (1991) J. Biomol. Str. Dynam. 9, 127-142.
(PDF)

Local variability and base sequence effect in DNA crystal structures. M.Bansal, D.Bhattacharyya (1990). J. Biomol. Struct. Dynam  8(3), 539-72. (PubMed)

Self-similarity and the assembly of collagen molecules, V. Sasisekharan and M.Bansal (1990) Curr. Sci. 59, 863-866. (PDF)

Definitions and Nomenclature of Nucleic Acid Structure Parameters, R.E.Dickerson, M.Bansal, Zhurkin (1989) J. Mol. Biol. 205, 787-791; Nucl. Acids Res. 15, 1797-1803; J. Biomol. Struct. Dynam. 6, 627-634; EMBO J. 8, 1-4. (PDF)

A self-consistent formulation for analysis and generation of non-uniform DNA structures, D.Bhattacharyya and M.Bansal (1989) J. Biomol. Struct. Dynam. 6, 635-653.
(PubMed) (PDF)

Molecular mechanics studies on poly(purine). poly(pyrimidine) sequences in DNA: Polymorphism and local variability, M.Bansal and N.Pattabiraman (1989) Biopolymers 28, 531-548. (
PDF)

Sequence criteria for Z-DNA formation: Studies on poly d(ACGT), K.Majumder, R.K.Mishra, M.Bansal and S.K.Brahmachari (1989) Nucl. Acids Res. 17, 450.
(
PubMed) (PDF)

Modelling DNA recognition by proteins: Interaction of an Asn dipeptide with DNA, B.Gopalakrishnan and M.Bansal (1988) Indian Jl. Biochem. Biophys. 25, 495-503.
(PubMed)

A general procedure for generation of curved DNA molecules, D. Bhattacharyya and M.Bansal (1988) J. Biomol. Struct. Dynam. 6, 93-104.
(
PubMed)

Theoretical studies on a-helices - DNA interactions, B.Gopalakrishnan and M.Bansal (1988) J. Biomol. Struct. Dynam. 5, 859-871. (PubMed)


Why do DNA helical models exhibit wedge rolls? A mathematical rationale, D.Bhattacharyya and M.Bansal, (1988) Curr. Sci. 57, 1159-1162. (PDF)

Role of Hydroxyproline in collagen folding: Conformational energy calculations on oligopeptides containing Proline and Hydroxyproline, M.Bansal and V.S. Ananthanarayanan (1988) Biopolymers 27, 299-312.
(PDF)

Energetic of left and right handed models of DNA, D.Bhattacharyya and M.Bansal (1987) J. Biomol. Struct. Dynam. 4, 1027-1040. (PubMed)

Comparison of inter-proton distances in DNA models with nOe data, B.Gopalakrishnan and M.Bansal (1985) Jl. Biosci. (supplement Part II) pp. 603-614. (PDF)

Maximum entropy calculation of Pf1 filamentous bacterial virus electron density at 4A resolution, R.Bryan, M.Bansal , W.Folkhard, C.Nave and D.A.Marvin (1983) Proc. Natl. Acad. Sci. USA, 80, 4728-4731.

Structure of D-DNA: 8-fold or 7-fold helix? N.Ramaswamy, M.Bansal, G.Gupta and V.Sasisekharan (1983) EMBO Jl. 2, 1557-1560. (PDF)

Left-handed helices for DNA: Studies on poly d(I-C), N.Ramaswamy, M.Bansal, G.Gupta and V.Sasisekharan (1982) Proc. Natl. Acad. Sci. USA, 79, 6109-6113. (PDF)

Sequence dependent molecular conformations of polynucleotides: Right and Left handed helices, V.Sasisekharan, G.Gupta and M.Bansal (1981) Int. J. Biol. Macromol.3 2-8.

A need for re-examination of the A-DNA fibre diffraction data, V.Sasisekharan, M.Bansal and G.Gupta (1981) Biochem. Biophys. Res. Comm. 102, 1087-1095.

Structure factor calculations for various DNA duplexes, M.Bansal and G.Gupta (1981) Int. Jl. Quant. Chem. 20, 407-418. (PDF)

Role of non-planar peptide unit in regular polypeptide helices: A new model for poly - beta - benzyl - L - aspartate, R.Namboodripad, M.Bansal and V. Sasisekharan (1981) Int. J. Pept. Prot. Res. 18, 374-382.
(PubMed)

A novel Z-structure for poly d(GC). poly d(GC), G.Gupta, M.Bansal and V.Sasisekharan (1980) Biochem. Biophys. Res. Commun. 95, 728-733. (PDF)

Reversal of handedness in DNA: A stable link between RU and LZ helices, G.Gupta, M.Bansal and V.Sasisekharan (1980) Biochem. Biophys. Res. Commun., 97, 1258-1267. (PDF)

Polymorphism and conformational flexibility of DNA: Right and left handed duplexes, G.Gupta, M.Bansal and V.Sasisekharan (1980) Int. J. Biol. Macromol. 2, 368-380. (PDF)

Conformational flexibility of DNA: Polymorphism and handedness, G.Gupta, M.Bansal and V.Sasisekharan (1980) Proc. Natl. Acad. Sci. USA, 77, 6486-6490. (PDF)

Structural investigations on poly-4-hydroxy-L-proline, II. Physicochemical studies, S.K.Brahmachari, M.Bansal, V.S.Ananthanarayanan and V.Sasisekharan (1979) Macromolecules, 12, 19-23. (PDF)

Structural investigations on poly-4-hydroxy-L-proline, I. Theoretical studies, M.Bansal, S.K.Brahmachari and V.Sasisekharan (1979) Macromolecules, 12, 23-28. (PDF)

A theoretical study on the structure of (Gly-Pro-Leu)n and (Gly-Leu-Pro)n, M.Bansal and G.N.Ramachandran (1978) Int. J. Pept. Prot. Res. 11 73-81.

Stereochemical restrictions on the occurence of aminoacid residues in the collagen structure, M.Bansal (1977) Int. J. Pept. Prot. Res. 9 224-233. (PubMed)

The fourier transform of collagen structure and its significance, M.Bansal (1977) Pramana, 9 339-347. (PDF)

Stereochemistry of the pyrrolidine rings in the collagen structure, G.N.Ramachandran and M.Bansal (1976) Curr. Sci. 45, 647-649.

Hydroxyproline stabilizes both intrafibrillar structure as well as inter-protofibrillar linkages in collagen, G.N.Ramachandran, M.Bansal and C.Ramakrishnan (1975) Curr. Sci. 44, 1-3.

Stabilization of the collagen structure by hydroxyproline residues, M.Bansal, C.Ramakrishnan and G.N.Ramachandran (1975) Proc. Indian Acad. Sci., 82A, 152-164. (PDF)

A triple-helical model for (Gly-Pro-Hyp)n with cis peptide units, M.Bansal, C.Ramakrishnan and G.N.Ramachandran (1975) Biopolymers 14, 2457-2466. (PDF)

A hypothesis on the role of hydroxyproline in stabilizing the collagen structure, G.N.Ramachandran, M.Bansal and R.S.Bhatnagar (1973) Biochim. Biophys. Acta, 322, 166- 171.(PDF)
 

b) Scientific Reviews:

Collagen Structure: The Madras triple helix and the current scenario, A. Bhattacharjee and M.Bansal (2005) IUBMB Life 57, 161-172.  (PDF)

DNA structure: Revisiting the Watson-Crick double helix, M.Bansal (2003) Current Sci. 85, 1556-1563. (PDF)

The Madras Triple Helix: Origins and Current Status, M.Bansal (2001) Resonance 6, 38-47. (PDF)

The structure of collagen, M.Bansal (1979), in `Vistas in Molecular, Solid State and Bio-physics', (Eds. A.S.N.Murty and V.Kumar) , 317-322.


c) Articles published in symposium volumes:

Role of Informatics in biodiversity conservation: Overview of available resources, S. Venkatesh and M.Bansal in 'Biodiversity: Status and Prospects'  (Eds. P.Tandon, M. Sharma, R. Swarup) Narosa Publishing House, New Delhi, 2005, pp.134-145.

Role of Informatics in Food Biotechnology and Safety, S. Venkatesh and M.Bansal, (2004) Indian Food Industry 23.2, 32-36.

Structural Variations Observed in DNA Crystal Structures and Their Implications for Protein-DNA Interaction, M.Bansal in 'Biological Structure and Dynamics' (Eds. Sarma, R.H. and Sarma, M.) Adenine Press, New York, 1996, Vol.1, 121-134.

Sequence-Structure Correlation in DNA: A Database cum Computer Modelling Study, M.Bansal, in Proceedings of Discussion Meeting on Computational Biology, I.I.Sc., Bangalore, 1995.

Local structural features of DNA as revealed by single- crystal x-ray diffraction methods, U.Heinemann, C. Alings, M.Bansal and M. Hahn in 'Advances in Life Sciences: Structural Tools for the Analysis of Protein-Nucleic Acid Complexes', Birkhauser Verlag Basel, 1992, pp. 53-61

Parameterization of Empirical Energy Functions for Biopolymers, M.Bansal in Proceedings of Discussion Meeting on 'Molecular Dynamics Simulation of Biological Macromolecules', I.I.Sc., Bangalore, 1992.

Real and apparent curvature in oligonucleotides, M.Bansal and D. Bhattacharyya, in 'Structure & Methods Vol.3: DNA & RNA' (Eds. R.H. Sarma & M.H. Sarma) Adenine Press, New York, 1990, pp. 139-153.

Structures of DNA: A case study of right and left handed duplexes in the B-form, V.Sasisekharan, M.Bansal and G.Gupta in `Nucleic Acids - Vectors of Life' (Ed. B.Pullman and D.Jortner) Reidel Press, Dordrecht, 1983, pp. 101-110.

Structure of DNA re-examined, V.Sasisekharan, M.Bansal and G.Gupta in `Structural aspects of recognition and assembly in Biological macromolecules' (Ed. M. Balaban) Balaban International Science Services, Rehovot, 1981, 501-521.

Conformational flexibility of DNA: A theoretical formalism, V.Sasisekharan, M.Bansal, S.K.Brahmachari and G.Gupta in `Biomolecular Stereodynamics' (Ed. R.H.Sarma) Adenine Press, New York, 1981, 123-150.

 

d) Chapters in books

Defining α-helix geometry by Cα atom trace vs (φ-ψ) torsion angles: a comparative analysis, A. Shelar*, P.Kumar* and M.Bansal in 'Biomolecular Forms and Functions' (Ed. M. Bansal and N.Srinivasan) IISc, Bangalore, 2013, pp.116-127.(PDF)

In silico identification of eukaryotic promoters VR Yella and M.Bansal in 'Synthetic and System Biology' (Eds. V.Singh and P.Dhar)Springer Pubs 63-75, 2015 (Book chapter).(PDF)

DNA structure and promoter engineering VR.Yella, A.Kumar and M.Bansal in 'Synthetic and System Biology' (Eds. V.Singh and P.Dhar)Springer Pubs 241-254, 2015 (Book chapter).(PDF)

Sequence dependent structural features of A3T3 vs (AT)3 from Molecular Dynamics study, A. Madhumalar and M.Bansal in 'Recent Trends in Biophysical Research' (Ed. N. Maiti, G. Suresh Kumar and S. Das) Double A Work Station, Kolkata, 2003, pp.10-16.

Cross-strand C-H..O and N-H..N Interactions in B-DNA Duplex Structure: Hydrogen Bonds or Short Contacts? M.Bansal and A. Ghosh in 'Perspectives in Structural Biology'  (Eds. M. Vijayan, N. Yathindra and A. S. Kolaskar) University Press, Hyderabad, 1999, pp. 602-613. (PDF)

Exploring the Structural Repertoire of Guanine Rich DNA Sequences: Computer Modelling Studies, M.Bansal, M. Ravikiran and S. Chowdhury in in 'Recent Trends in Biophysical Research'  (Ed. J. Leszczynski) Elsevier Science, Amsterdam, 1999, pp. 279-323.

New Theoretical Models for DNA Structure, M.Bansal and V.Sasisekharan in 'Landolt-Bornstein Numerical Data and Functional Relationships', New Series, Vol.VII/1 d on Nucleic Acids (Ed. W.Saenger) Springer-Verlag, Berlin, 1991, pp.455-486.

DNA Bending: A natural consequence of base sequence dependent variability, M.Bansal, D. Bhattacharyya and D. Mohanty in 'Biomolecular Structure and Interactions' (Eds. S. Ramaseshan and P. Balaram), Indian Academy of Sciences, Bangalore, 1991, pp. 347-362.

Straight and Curved DNA : Structural Variability Revisited, M.Bansal and V.Sasisekharan in 'Theoretical Methods in Biological Chemistry', (Eds. D.L.Beveridge and R.Lavery) Adenine Press, New York, 1990, pp.329-342.

Molecular Model-building of DNA: Constraints and Restraints, M.Bansal and V.Sasisekharan in `Theoretical Chemistry of Biological Systems', (Ed. Naray-Szabo) Elsevier Scientific Publishing Co., Amsterdam,1986, pp.127-218.


e) Other publications:
 

Twists and Turns on the path to DNA. M.Bansal, (2012) Women and society THE ROAD TO CHANGE., 40-47.

Nucleic acids in disease and disorder: Understanding the language of life emerging from the 'ABC' of DNA. M.Bansal, B.Jayaram and M.Aditya (2012) Journal of Biosciences.,37,375-378.(PDF)

BioSuite: A comprehensive bioinformatics package (A unique industry academia collaboration ) The NMTTLI- Biosuite Team: (2007) Curr. Sci. 92, 29-38.(PDF)

Classics in Indian Medicine: Structure of collagen, M.Bansal (2007) Natl. Med. Jl. India, 19, 348-352.

Research News: DNA Structure: Yet Another Avatar? M.Bansal (1999), Curr. Sci, 76, 1178-1181. (PDF)

Book Review: " Computer Modeling in Molecular Biology" (Ed. J. Goodfellow), M.Bansal (1995) Ind. Jl. Biochem. Biophys, 33, 237-238.

Studies on Structure of Fibrous Proteins, Nucleic Acids and Macromolecular Assemblies, M.Bansal in 'Research and Development in Biological Sciences'. Platinum Jubilee Volume, IISc, Bangalore, 1984, pp.113

 

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Copyright 2008 Prof. Manju Bansal
Last modified: Jan 2016