Information
related to 1766 E. coli promoters annotated in the Ecocyc Database (Version
12.5, updated on 8th October, 2008) (Keseler et al 2005) was downloaded.
For 176 of them either the transcription direction or transcription start
site (TSS) information was not available. In addition, the TSS for the first
promoter, PM00249 is at position 148 and does not have a 500 bp sequence
upstream of the TSS. Hence, only 1590 promoters were considered for
inclusion in the Ecoprom database.